PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054542-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 516aa    MW: 57221.4 Da    PI: 4.369
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054542-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.6e-36161072102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++ +++sws+ +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  PSME_00054542-RA  16 FLTKTYDMVDDPATASIVSWSSGNNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLL 99 
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i r+k 
  PSME_00054542-RA 100 KNIYRRKP 107
                       *****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.5E-406100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.53E-3612105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-6312105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MDGSQTSSTS NAPPPFLTKT YDMVDDPATA SIVSWSSGNN SFIVWNPPEF ARDLLPKYFK  60
HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK NIYRRKPTHS HTQPQQQQGQ  120
SASVSACVEV GKFGLEEEIE RLKRDKNVLM TELVRLRQQQ QSTDIQLQTV SQRLQGMEQR  180
QQQMMSFLAK AMQNPGFLAQ LVQQNENNMR LAATNKKRRL PKQEENSQDG QQVPPDGQIV  240
KYQPALNDAA KALFMQIFNT ETSNKLEPST NGLDNFLDVG CSTSEAIDNG NGSSIGRQSG  300
VTLTEMHGTS AFSDACVSSD ISDFQASSTL SEMHCSAGLP EIAASSGFPE MVVSSGLEDM  360
HSFSNLAESM VTSTDIPTSQ LELPEMQSIV TVNHNGRLPS EDYMQPKMLR QDVNAEPMAM  420
DMGLVIDGDR FSSEGDGDIM LDGEDMLPEI NDVFWEQFLA GSASPGGTEE AESVVQESLT  480
KDQDEKASEN GNWSNKKQNM DDLTEQMGQL ASESNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26310517129Heat shock factor protein 1
5d5v_B2e-26310517129Heat shock factor protein 1
5d5v_D2e-26310517129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131750.0BT113175.1 Picea glauca clone GQ03326_L15 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854048.20.0PREDICTED: heat stress transcription factor A-1
SwissprotQ84T611e-159HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLU5CZX60.0U5CZX6_AMBTC; Uncharacterized protein
STRINGVIT_16s0039g01840.t011e-157(Vitis vinifera)
STRINGLOC_Os03g63750.11e-157(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-118heat shock factor 3